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BioMIP Research Group 2004-2017
MICROSYSTEMS CHEMISTRY AND BIOMOLECULAR INFORMATION PROCESSING
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BioMIP
Research
Molecular Information Processing
Synthetic systems self-organization
Chemical System Evolution
mprDPD - mesoscale simulation
Motivation
Method
Applications
EvoSelf - evolving amphiphilic systems
Model
Widom lattice model statistical mechanics
Amphiphile phases in Widom model
Combinatorial amphiphiles control multiphase system
Interface for evolving amphiphile self-assembly
GSA - Genetic Self-assembly
EvoCPU - algorithm self-assembly
Motivation
Micro-controllers and molecules
Reducing micro-controller complexity
Structured programming
The consequences
A molecular micro-controller
Programming such systems
KRD - systems kinetic RD
PRESS - stochastic spatial kinetics
Motivation
PRESS approach
Simulations with PRESS
Microsystems Chemistry
Microsystem Construction
FPFA concepts
FPFA silicon based electrode-layer design and fabrication
Polyimide based electrode layer
Soft-lithography and assembly
Integrated experimental platform
Projects
PACE
Artificial Cells in PACE
Evolutionary Self-assembly
Microfluidic complementation systems
The omega machine
Hepatosys
Mesoscale systems simulation
Protein sorting
Collaboration partners
ECCell
MATCHIT
COBRA
Roadmap
CADMAD
Publications-BioMIP-CADMAD
MICREAgents
Electronic Genomes EXPLORING Physical and CHEMICAL Self-Organization
Publications
2015
2014
2013
2012
2011
2010
2009
2008
2007
2006
2005
2004 (RUB)
1977-2006
Patents
Teaching
Team
John S. McCaskill
Patrick Wagler
Uwe Tangen
Thomas Maeke
Abhishek Sharma
Jana Bagheri-Maurer
Gabriel Antonio Minero
Sigrid McCaskill
Tarik Abduzhalim
Rudolf Füchslin
Steffen Chemnitz
Nadine Mennes
Martina Jünger
Thomas Palutke
Johannes Ott
Volker Patzke
Carla Verhaelen
Alumni from RUB
BioMIP team photos
Jobs
History of BioMIP
Contact
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Hepatosys
Mesoscale systems simulation
Protein sorting
Collaboration partners
RUB Context
BioMIP intern
John McCaskill Homepage
Fac. Chemistry and Biochemistry
RD Interfacial Systems Chemistry
Ruhr-Universität Bochum
International Activities
TRUCE CA- Unconventional Computing
Recent INTN’L Projects
Eur. Centre for Living Technology
Electronic Genomes ... EON Seed Grant, John Templeton Foundation
MICREAGENTS Project
TRUCE CA- Unconventional Computing - Roadmap Contributor
COST Action Systems Chemistry (2014-17)
COBRA CA Biochem_IT (2011-2014)
CADMAD Project (FP7 2011-2014)
MATCHIT (FP7 2009-12)
COST Systems Chemistry (2008-14)
ECCell Project (FP7 2008-12)
HepatoSys Project (BMBF 2004-10)
PACE Project (FP6 2004-8)
SPLiT (proposed ICT Flagship 2010)
Protein sorting
a hierarchy of successively simpler Heinrich models
combinatorially complex sorting
DPD model with explicit compartments
spatially resolved Heinrich model
stochastic diffusive Heinrich models
Reference
Generation of nonidentical compartments in vesicular transport systems -- Heinrich and Rapoport (2005) J. Cell Biol. 168 271
heinrich 4 XY csize 4 ves types
The structured mathematica notebook is readable as a web page below
heinrich 4 XY constant size 4 vesicle types
RUB 2015. Copyright 2007-2013. All rights reserved. Web managers:
J. S. McCaskill
, T. Maeke.
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